Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4551

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4550: 12918 - K16186 RRAGC_D Ras-related GTP-binding protein C/D, at 438083 to 440152 12918 mRNA_4551: 12919 - HMMPfam-Whi5 like-PF08528, at 440384 to 442291 12919 mRNA_4552: 12920 - KOG2263 Methionine synthase II (cobalamin-independent), at 442717 to 444581 12920

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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440,153 + -0.9
440,561 + -2.6
440,574 - 1.4
440,891 - 12919 mRNA_4551 0.27 0.2
441,443 - 12919 mRNA_4551 0.56 2.2
441,449 + 12919 mRNA_4551 0.56 1.0
441,614 - 12919 mRNA_4551 0.64 0.9
441,626 - 12919 mRNA_4551 0.65 0.5
441,633 + 12919 mRNA_4551 0.65 0.0
441,634 + 12919 mRNA_4551 0.66 -1.7
441,750 - 12919 mRNA_4551 0.72 1.6
441,926 + 12919 mRNA_4551 0.81 0.0
442,201 - 2.0
442,202 - -0.6
442,212 + -1.3
442,337 - 1.6
442,339 + 0.5
442,340 - 0.0
442,351 + 1.8
442,383 + 0.1
442,495 - 1.6
442,503 - 0.1
442,511 + -0.3
442,517 + 1.1
442,523 - -1.4
442,524 + 2.9
442,529 + -0.6
442,530 - -0.0
442,757 - -1.4
442,875 + -0.9
442,964 + 12920 mRNA_4552 0.13 -1.3