Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4526

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381008 to 382487 12893 mRNA_4526: 12894 - K12446 E2.7.1.46 L-arabinokinase, at 382744 to 384550 12894 mRNA_4527: 12895 - SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 384813 to 386229 12895

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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381,808 - 12893 mRNA_4525 0.54 -0.1
381,812 + 12893 mRNA_4525 0.54 -0.4
382,086 + 12893 mRNA_4525 0.73 0.8
382,112 + 12893 mRNA_4525 0.75 -0.7
382,142 - 12893 mRNA_4525 0.77 -1.0
382,244 - 12893 mRNA_4525 0.84 -3.2
382,259 + 12893 mRNA_4525 0.85 2.1
382,285 - 12893 mRNA_4525 0.86 -0.4
382,291 - 12893 mRNA_4525 0.87 0.3
382,291 - 12893 mRNA_4525 0.87 0.1
382,298 + 12893 mRNA_4525 0.87 0.0
382,400 + -2.7
382,405 + 2.5
382,518 - 2.2
382,676 - 0.7
382,684 + 0.4
382,807 - 0.0
382,828 - 0.7
382,934 + 12894 mRNA_4526 0.11 -0.5
382,979 + 12894 mRNA_4526 0.13 -0.2
383,104 + 12894 mRNA_4526 0.20 1.9
383,233 - 12894 mRNA_4526 0.27 -0.2
383,820 - 12894 mRNA_4526 0.60 0.8
383,858 - 12894 mRNA_4526 0.62 0.6
383,877 + 12894 mRNA_4526 0.63 1.0
384,590 - -0.1
384,608 - 0.4
384,904 - -0.2
385,233 + 12895 mRNA_4527 0.30 -0.8
385,366 + 12895 mRNA_4527 0.39 0.7
385,369 - 12895 mRNA_4527 0.39 1.4
385,379 + 12895 mRNA_4527 0.40 1.7