Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4522

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4520: 12888 - Hypothetical Protein, at 373888 to 374415 12888 mRNA_4521: 12889 - SUPERFAMILY--SSF117018, at 374666 to 375210 12889 mRNA_4522: 12890 - KOG0967 ATP-dependent DNA ligase I, at 375338 to 377134 12890 mRNA_4523: 12891 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 377162 to 379234 12891

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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374,405 - -0.4
374,409 - -0.3
374,431 + -0.1
374,536 + 2.0
374,552 + 0.1
374,563 - 2.5
374,647 + 2.6
374,943 - 12889 mRNA_4521 0.51 0.5
374,944 + 12889 mRNA_4521 0.51 -0.7
374,967 - 12889 mRNA_4521 0.55 0.4
375,137 + 12889 mRNA_4521 0.86 0.5
375,293 + 0.9
375,840 + 12890 mRNA_4522 0.28 1.4
376,000 - 12890 mRNA_4522 0.37 1.4
376,264 + 12890 mRNA_4522 0.52 1.0
376,323 - 12890 mRNA_4522 0.55 -0.6
377,259 - 0.2
378,019 + 12891 mRNA_4523 0.41 3.1