Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4512

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4511: 12879 - Hypothetical Protein, at 351400 to 352761 12879 mRNA_4512: 12880 - KOG1152 Signal transduction serine/threonine kinase with PAS/PAC sensor domain, at 353194 to 354896 12880 mRNA_4513: 12881 - K00981 E2.7.7.41, CDS1, CDS2, cdsA phosphatidate cytidylyltransferase, at 355314 to 357879 12881

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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352,196 + 12879 mRNA_4511 0.58 0.4
352,207 + 12879 mRNA_4511 0.59 0.6
352,208 - 12879 mRNA_4511 0.59 0.5
352,211 + 12879 mRNA_4511 0.60 -1.1
352,220 - 12879 mRNA_4511 0.60 -0.8
352,220 + 12879 mRNA_4511 0.60 1.8
352,221 - 12879 mRNA_4511 0.60 -0.3
352,224 - 12879 mRNA_4511 0.60 0.4
352,225 + 12879 mRNA_4511 0.61 1.2
352,227 + 12879 mRNA_4511 0.61 0.0
352,246 + 12879 mRNA_4511 0.62 0.7
352,259 + 12879 mRNA_4511 0.63 2.6
352,269 - 12879 mRNA_4511 0.64 1.0
352,275 - 12879 mRNA_4511 0.64 0.3
352,276 + 12879 mRNA_4511 0.64 -1.4
352,286 - 12879 mRNA_4511 0.65 -0.4
352,288 - 12879 mRNA_4511 0.65 1.2
352,304 - 12879 mRNA_4511 0.66 0.9
352,304 - 12879 mRNA_4511 0.66 -0.2
352,304 + 12879 mRNA_4511 0.66 1.0
352,305 + 12879 mRNA_4511 0.66 -0.3
352,315 + 12879 mRNA_4511 0.67 1.9
352,318 + 12879 mRNA_4511 0.67 -0.1
352,324 - 12879 mRNA_4511 0.68 0.6
352,420 + 12879 mRNA_4511 0.75 -0.2
352,424 - 12879 mRNA_4511 0.75 1.6
352,437 + 12879 mRNA_4511 0.76 -0.1
352,457 + 12879 mRNA_4511 0.78 -0.0
352,470 - 12879 mRNA_4511 0.79 0.0
352,479 - 12879 mRNA_4511 0.79 3.0
352,617 + 12879 mRNA_4511 0.89 -0.2
352,623 - 12879 mRNA_4511 0.90 0.2
352,625 - 1.3
352,625 - 0.4
352,665 - 0.2
352,816 - 1.1
353,252 - 0.7
353,386 + 12880 mRNA_4512 0.11 1.2
353,675 + 12880 mRNA_4512 0.28 1.3
353,994 + 12880 mRNA_4512 0.47 -1.6
353,999 + 12880 mRNA_4512 0.47 0.2
354,161 + 12880 mRNA_4512 0.57 -0.2
354,439 - 12880 mRNA_4512 0.73 -1.5
354,445 + 12880 mRNA_4512 0.73 -2.0
354,604 - 12880 mRNA_4512 0.83 -1.2
354,612 + 12880 mRNA_4512 0.83 1.7
355,205 - 1.7