Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4509

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343058 to 345136 12876 mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345259 to 347501 12877 mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348191 to 349956 12878

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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344,266 + 12876 mRNA_4508 0.58 -0.3
344,328 - 12876 mRNA_4508 0.61 -0.1
344,631 + 12876 mRNA_4508 0.76 0.7
344,860 - 12876 mRNA_4508 0.87 -1.0
344,893 + 12876 mRNA_4508 0.88 1.3
345,017 - 0.4
345,027 - -2.3
345,154 - -0.4
345,166 - -0.1
345,169 + -2.0
345,192 - 0.4
345,196 - -0.4
345,208 - 0.1
345,496 - 12877 mRNA_4509 0.11 -0.7
346,360 - 12877 mRNA_4509 0.49 -0.1
346,470 - 12877 mRNA_4509 0.54 -0.6
347,377 - 0.2
347,686 - 2.5
347,813 - -0.2
347,976 - 0.3
348,130 - 1.6
348,312 - 0.8
348,418 + 12878 mRNA_4510 0.13 2.5