Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4508

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341056 to 342749 12875 mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343058 to 345136 12876 mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345259 to 347501 12877

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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342,351 - 12875 mRNA_4507 0.76 2.3
342,360 - 12875 mRNA_4507 0.77 1.9
342,816 + -0.1
342,834 + 0.9
342,864 + 0.7
342,897 + -0.3
342,922 - 0.0
343,154 - 0.1
343,315 - 12876 mRNA_4508 0.12 1.3
343,593 + 12876 mRNA_4508 0.26 0.5
343,594 - 12876 mRNA_4508 0.26 -0.3
343,745 + 12876 mRNA_4508 0.33 0.3
343,858 - 12876 mRNA_4508 0.38 0.8
344,101 - 12876 mRNA_4508 0.50 -0.9
344,162 - 12876 mRNA_4508 0.53 4.0
344,266 + 12876 mRNA_4508 0.58 -0.3
344,328 - 12876 mRNA_4508 0.61 -0.1
344,631 + 12876 mRNA_4508 0.76 0.7
344,860 - 12876 mRNA_4508 0.87 -1.0
344,893 + 12876 mRNA_4508 0.88 1.3
345,017 - 0.4
345,027 - -2.3
345,154 - -0.4
345,166 - -0.1
345,169 + -2.0
345,192 - 0.4
345,196 - -0.4
345,208 - 0.1
345,496 - 12877 mRNA_4509 0.11 -0.7