Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4501

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327724 to 330564 12868 mRNA_4501: 12869 - Hypothetical Protein, at 330737 to 332545 12869 mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332888 to 334792 12870

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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329,780 - 12868 mRNA_4500 0.72 -1.3
329,795 - 12868 mRNA_4500 0.73 1.3
330,197 - 12868 mRNA_4500 0.87 -0.2
330,361 + 1.2
330,364 - 0.7
330,476 - -0.6
330,512 + -0.3
330,523 + -1.6
330,644 + 1.0
330,655 - -0.2
330,674 + 0.1
331,045 + 12869 mRNA_4501 0.17 0.8
331,223 - 12869 mRNA_4501 0.27 0.7
331,664 - 12869 mRNA_4501 0.51 0.4
331,768 - 12869 mRNA_4501 0.57 1.4
331,787 + 12869 mRNA_4501 0.58 1.6
331,792 - 12869 mRNA_4501 0.58 1.1
332,032 + 12869 mRNA_4501 0.72 0.6
332,078 - 12869 mRNA_4501 0.74 -0.3
332,090 + 12869 mRNA_4501 0.75 0.0
332,400 + 0.4
332,417 + -0.6
332,537 - -1.5
332,894 - 2.4
333,124 - 12870 mRNA_4502 0.12 0.7
333,317 - 12870 mRNA_4502 0.23 1.3
333,459 - 12870 mRNA_4502 0.30 0.5