Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4495

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4494: 12862 - SUPERFAMILY--SSF52047, at 311321 to 312953 12862 mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313110 to 316762 12863 mRNA_4496: 12864 - SUPERFAMILY--SSF81383, at 317047 to 318791 12864

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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312,243 + 12862 mRNA_4494 0.56 0.5
312,417 + 12862 mRNA_4494 0.67 0.2
312,420 - 12862 mRNA_4494 0.67 -0.2
312,444 + 12862 mRNA_4494 0.69 -0.4
312,551 + 12862 mRNA_4494 0.75 0.1
312,699 - 12862 mRNA_4494 0.84 0.9
312,750 + 12862 mRNA_4494 0.88 0.7
312,834 + 0.8
312,888 + 0.2
312,916 + 0.6
313,004 - -0.2
313,042 + -1.9
313,155 - -0.1
313,171 + -0.8
313,190 - 0.2
313,203 + -0.3
313,329 + 0.9
313,332 - 0.3
313,349 + 1.0
313,459 + 2.7
313,624 - 12863 mRNA_4495 0.14 1.0
313,628 + 12863 mRNA_4495 0.14 1.5
313,639 + 12863 mRNA_4495 0.14 0.5
313,920 - 12863 mRNA_4495 0.22 0.7
313,933 + 12863 mRNA_4495 0.23 2.4
314,041 - 12863 mRNA_4495 0.25 0.7
314,239 - 12863 mRNA_4495 0.31 2.1
314,455 - 12863 mRNA_4495 0.37 3.1
314,855 - 12863 mRNA_4495 0.48 2.9
314,919 - 12863 mRNA_4495 0.50 2.0
314,952 - 12863 mRNA_4495 0.50 0.1
315,258 - 12863 mRNA_4495 0.59 -0.9
315,403 + 12863 mRNA_4495 0.63 -1.1
315,419 - 12863 mRNA_4495 0.63 1.6
315,502 - 12863 mRNA_4495 0.65 -0.1
315,505 - 12863 mRNA_4495 0.66 1.0
315,735 + 12863 mRNA_4495 0.72 0.3
315,847 + 12863 mRNA_4495 0.75 0.7
315,905 - 12863 mRNA_4495 0.77 0.4
315,974 - 12863 mRNA_4495 0.78 0.6
315,976 + 12863 mRNA_4495 0.78 -0.6
316,556 - -0.0
316,619 + -0.1
316,653 + -0.1
316,700 - 1.4
316,846 - 1.3
316,850 + 1.7
316,967 + 0.0
317,297 - 12864 mRNA_4496 0.14 0.6
317,326 - 12864 mRNA_4496 0.16 0.8
317,337 - 12864 mRNA_4496 0.17 1.6
317,422 - 12864 mRNA_4496 0.21 -0.2
317,706 - 12864 mRNA_4496 0.38 -0.3