Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4490

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302712 to 304024 12857 mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304461 to 305865 12858 mRNA_4491: 12859 - Hypothetical Protein, at 306091 to 307232 12859

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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303,480 - 12857 mRNA_4489 0.58 0.6
303,490 - 12857 mRNA_4489 0.59 -1.5
303,781 - 12857 mRNA_4489 0.81 0.2
303,796 + 12857 mRNA_4489 0.83 0.6
303,924 - 0.8
303,937 - 0.1
304,081 - 0.3
304,083 + -0.0
304,112 + 0.4
304,112 + -0.7
304,122 + 2.0
304,123 - -0.6
304,174 - -0.7
304,196 - -1.3
304,234 + -2.3
304,271 + 0.6
304,316 - 2.3
304,338 + 0.1
304,668 - 12858 mRNA_4490 0.15 -0.1
304,947 + 12858 mRNA_4490 0.35 -0.4
305,112 + 12858 mRNA_4490 0.46 -0.2
305,263 - 12858 mRNA_4490 0.57 0.1
305,325 - 12858 mRNA_4490 0.61 0.4
305,721 + 12858 mRNA_4490 0.90 0.3
305,904 - 1.7
306,298 + 12859 mRNA_4491 0.18 1.0
306,548 - 12859 mRNA_4491 0.40 -0.0
306,586 + 12859 mRNA_4491 0.43 0.4
306,765 + 12859 mRNA_4491 0.59 -0.3
306,812 + 12859 mRNA_4491 0.63 3.5