Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4489

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301518 to 302496 12856 mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302712 to 304024 12857 mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304461 to 305865 12858

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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302,582 - -0.1
302,596 - 1.8
302,620 + 1.8
302,643 + 1.4
302,762 + 0.6
302,764 - -2.6
302,884 + 12857 mRNA_4489 0.13 0.3
303,064 - 12857 mRNA_4489 0.27 0.3
303,201 - 12857 mRNA_4489 0.37 -0.6
303,480 - 12857 mRNA_4489 0.58 0.6
303,490 - 12857 mRNA_4489 0.59 -1.5
303,781 - 12857 mRNA_4489 0.81 0.2
303,796 + 12857 mRNA_4489 0.83 0.6
303,924 - 0.8
303,937 - 0.1
304,081 - 0.3
304,083 + -0.0
304,112 + 0.4
304,112 + -0.7
304,122 + 2.0
304,123 - -0.6
304,174 - -0.7
304,196 - -1.3
304,234 + -2.3
304,271 + 0.6
304,316 - 2.3
304,338 + 0.1
304,668 - 12858 mRNA_4490 0.15 -0.1
304,947 + 12858 mRNA_4490 0.35 -0.4