Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4485

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289880 to 293833 12852 mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294056 to 296303 12853 mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296577 to 298255 12854

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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293,091 - 12852 mRNA_4484 0.81 2.7
293,557 + 1.2
293,584 + -0.4
293,627 + 0.8
293,743 + 1.5
293,855 - -0.6
293,910 - 0.4
293,911 - -0.5
293,919 - -0.5
293,921 - 0.1
293,926 - 0.5
293,929 + 0.9
293,931 - 0.3
293,934 + -0.1
293,943 - 0.8
293,970 + 0.4
293,975 + -2.1
293,996 + -1.0
294,080 + -0.2
294,084 + -0.2
294,256 - 0.8
294,357 - 12853 mRNA_4485 0.13 0.1
294,608 - 12853 mRNA_4485 0.25 0.6
294,658 - 12853 mRNA_4485 0.27 0.0
294,810 - 12853 mRNA_4485 0.34 -1.5
295,541 + 12853 mRNA_4485 0.66 -1.6
295,672 + 12853 mRNA_4485 0.72 -0.2
295,951 - 12853 mRNA_4485 0.84 -0.5
295,984 - 12853 mRNA_4485 0.86 -0.5
296,134 + 1.8
296,231 - 2.6
296,259 - -0.8
296,265 - -2.0
296,268 - -0.3
296,268 + 0.2
296,269 - 0.0
296,283 + 0.2
296,289 + 0.1
296,330 + -0.9
296,336 - 0.3
296,438 + 0.7
296,614 - 1.2
296,850 - 12854 mRNA_4486 0.16 0.5
296,859 + 12854 mRNA_4486 0.17 0.9
296,988 + 12854 mRNA_4486 0.24 -0.2
297,188 + 12854 mRNA_4486 0.36 -0.1
297,300 - 12854 mRNA_4486 0.43 1.7