Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4479

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277974 to 281759 12846 mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282366 to 283335 12847 mRNA_4480: 12848 - Hypothetical Protein, at 283832 to 284551 12848

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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281,438 + 0.3
281,474 + -0.7
281,622 + 1.2
282,041 - 0.5
282,043 + 2.7
282,048 + 0.2
282,048 - -0.2
282,049 + 2.4
282,065 - 1.3
282,099 - -0.2
282,108 + 1.3
282,111 - -1.6
282,113 - -0.4
282,115 - 2.5
282,124 - -0.7
282,142 + 0.3
282,144 + 0.3
282,172 + 0.8
282,253 + -1.7
282,351 + 0.7
282,406 - 3.2
282,413 - -0.0
282,839 - 12847 mRNA_4479 0.49 -0.5
283,250 + 1.4
283,553 + 1.4
283,559 - -0.1
283,565 + 3.0
283,567 + -0.1
283,582 - -0.1
283,585 + 1.8
283,694 + 1.1
283,717 - 0.7
283,720 - -0.4
283,739 + 1.2
283,742 - 1.0
283,868 - 2.0
283,871 + -0.6
283,875 + -1.0
284,019 + 12848 mRNA_4480 0.26 0.9
284,036 - 12848 mRNA_4480 0.28 -0.8
284,060 + 12848 mRNA_4480 0.32 0.5
284,061 + 12848 mRNA_4480 0.32 0.0
284,170 + 12848 mRNA_4480 0.47 1.1
284,181 + 12848 mRNA_4480 0.48 2.6
284,187 - 12848 mRNA_4480 0.49 1.9
284,197 + 12848 mRNA_4480 0.51 1.6
284,208 - 12848 mRNA_4480 0.52 -2.0
284,215 - 12848 mRNA_4480 0.53 -0.4
284,254 - 12848 mRNA_4480 0.59 0.4
284,269 + 12848 mRNA_4480 0.61 2.1
284,291 + 12848 mRNA_4480 0.64 0.4
284,300 + 12848 mRNA_4480 0.65 -0.4
284,301 + 12848 mRNA_4480 0.65 1.3
284,320 + 12848 mRNA_4480 0.68 0.2
284,324 - 12848 mRNA_4480 0.68 1.5