Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4453

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217165 to 218716 12820 mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218886 to 222303 12821 mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223173 to 226550 12822

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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218,406 + 12820 mRNA_4452 0.80 -0.9
218,420 - 12820 mRNA_4452 0.81 2.1
218,434 - 12820 mRNA_4452 0.82 -1.2
218,507 + 12820 mRNA_4452 0.86 1.2
218,759 + 0.4
218,760 - -0.2
218,846 - 1.4
218,904 + 2.0
218,991 + 0.1
219,051 - -0.4
219,197 + -0.4
219,258 - 12821 mRNA_4453 0.11 0.7
219,332 + 12821 mRNA_4453 0.13 0.6
219,494 + 12821 mRNA_4453 0.18 -3.3
219,497 - 12821 mRNA_4453 0.18 2.3
219,630 - 12821 mRNA_4453 0.22 0.2
219,646 - 12821 mRNA_4453 0.22 0.6
219,772 + 12821 mRNA_4453 0.26 1.9
219,950 - 12821 mRNA_4453 0.31 0.7
220,026 - 12821 mRNA_4453 0.33 0.2
220,091 + 12821 mRNA_4453 0.35 0.0
220,164 - 12821 mRNA_4453 0.37 0.8
220,217 - 12821 mRNA_4453 0.39 -0.1
220,275 + 12821 mRNA_4453 0.41 2.2
220,336 + 12821 mRNA_4453 0.42 0.4
220,374 - 12821 mRNA_4453 0.44 2.9
220,392 + 12821 mRNA_4453 0.44 0.0
220,448 + 12821 mRNA_4453 0.46 -0.6
220,720 + 12821 mRNA_4453 0.54 2.0
220,774 - 12821 mRNA_4453 0.55 0.7
220,824 + 12821 mRNA_4453 0.57 0.1
220,831 + 12821 mRNA_4453 0.57 0.6
220,930 + 12821 mRNA_4453 0.60 -3.5
221,020 + 12821 mRNA_4453 0.62 -0.3
221,090 + 12821 mRNA_4453 0.64 -2.7
221,125 - 12821 mRNA_4453 0.66 1.2
221,190 + 12821 mRNA_4453 0.67 1.7
221,220 + 12821 mRNA_4453 0.68 0.4
221,255 - 12821 mRNA_4453 0.69 0.5
221,285 - 12821 mRNA_4453 0.70 0.6
221,294 + 12821 mRNA_4453 0.70 -0.7
221,348 + 12821 mRNA_4453 0.72 -1.9
221,396 - 12821 mRNA_4453 0.73 -2.3
221,526 - 12821 mRNA_4453 0.77 0.9
221,683 - 12821 mRNA_4453 0.82 -0.6
221,833 + 12821 mRNA_4453 0.86 -0.5
221,833 - 12821 mRNA_4453 0.86 0.0
221,995 - 0.2
222,141 - -0.2
222,158 - 3.0
222,187 + 0.3
222,334 + 1.2
222,337 + 0.5
222,337 + 0.9
222,418 + 1.3
222,468 + 0.5
222,487 + 0.2
222,577 - -1.0
222,708 - -0.2
222,726 - 0.8
222,787 - 1.4
223,042 + 0.9
223,051 - -1.5
223,072 + -0.6
223,128 - 0.1
223,168 - 1.9
223,177 + 0.4
223,226 + 1.4