Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4452

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4451: 12819 - K03355 APC8, CDC23 anaphase-promoting complex subunit 8, at 214508 to 216794 12819 mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217165 to 218716 12820 mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218886 to 222303 12821

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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216,862 - 0.9
216,889 + 0.1
216,986 + 0.5
216,997 - 1.6
217,001 - 0.5
217,018 + -1.2
217,026 - 0.7
217,032 + -0.7
217,036 - 0.8
217,192 - 3.1
217,214 + -1.9
217,303 + 2.3
217,331 - 12820 mRNA_4452 0.11 1.2
217,812 + 12820 mRNA_4452 0.42 -1.1
218,406 + 12820 mRNA_4452 0.80 -0.9
218,420 - 12820 mRNA_4452 0.81 2.1
218,434 - 12820 mRNA_4452 0.82 -1.2
218,507 + 12820 mRNA_4452 0.86 1.2
218,759 + 0.4
218,760 - -0.2
218,846 - 1.4
218,904 + 2.0
218,991 + 0.1
219,051 - -0.4
219,197 + -0.4
219,258 - 12821 mRNA_4453 0.11 0.7
219,332 + 12821 mRNA_4453 0.13 0.6
219,494 + 12821 mRNA_4453 0.18 -3.3
219,497 - 12821 mRNA_4453 0.18 2.3
219,630 - 12821 mRNA_4453 0.22 0.2
219,646 - 12821 mRNA_4453 0.22 0.6