Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4449

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206220 to 210253 12816 mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210344 to 212336 12817 mRNA_4450: 12818 - Hypothetical Protein, at 212523 to 213518 12818

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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209,569 - 12816 mRNA_4448 0.83 2.5
209,606 + 12816 mRNA_4448 0.84 0.9
209,864 - -0.2
209,980 + -0.3
209,986 + -1.8
209,996 - 0.6
210,013 + 0.3
210,024 + 0.6
210,032 + 0.8
210,335 + -1.2
210,615 - 12817 mRNA_4449 0.14 0.4
210,779 - 12817 mRNA_4449 0.22 1.8
210,908 - 12817 mRNA_4449 0.28 0.8
211,048 - 12817 mRNA_4449 0.35 0.5
211,362 + 12817 mRNA_4449 0.51 -0.0
211,366 - 12817 mRNA_4449 0.51 -0.8
211,467 - 12817 mRNA_4449 0.56 1.2
211,467 + 12817 mRNA_4449 0.56 -0.1
211,898 - 12817 mRNA_4449 0.78 0.3
211,916 - 12817 mRNA_4449 0.79 0.2
212,084 + 12817 mRNA_4449 0.87 -0.2
212,153 + -0.5
212,172 - -0.0
212,277 - 0.2
212,780 - 12818 mRNA_4450 0.26 -1.5
213,203 + 12818 mRNA_4450 0.68 0.3
213,206 + 12818 mRNA_4450 0.69 0.7
213,216 - 12818 mRNA_4450 0.70 0.1