Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4441

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183991 to 186593 12808 mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187082 to 188392 12809 mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188576 to 190157 12810

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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186,705 - 1.1
186,776 - 0.5
186,894 + 0.9
187,167 + 0.1
187,173 + 0.7
187,326 - 12809 mRNA_4441 0.19 1.1
187,335 + 12809 mRNA_4441 0.19 -1.1
187,745 - 12809 mRNA_4441 0.51 -0.1
187,930 + 12809 mRNA_4441 0.65 0.1
187,960 + 12809 mRNA_4441 0.67 -0.8
188,045 - 12809 mRNA_4441 0.73 0.8
188,052 + 12809 mRNA_4441 0.74 3.1
188,175 - 12809 mRNA_4441 0.83 0.3
188,176 + 12809 mRNA_4441 0.83 1.2
188,394 + 0.0
188,490 + -0.4
188,500 - 0.8
188,522 + 1.5
188,641 - 1.3
188,659 + -0.9
188,666 - 2.7
188,669 + 4.3
188,829 + 12810 mRNA_4442 0.16 -0.2
188,920 - 12810 mRNA_4442 0.22 2.1
188,990 + 12810 mRNA_4442 0.26 0.1
189,045 - 12810 mRNA_4442 0.30 3.1
189,051 + 12810 mRNA_4442 0.30 -0.3
189,108 + 12810 mRNA_4442 0.34 0.6
189,231 + 12810 mRNA_4442 0.41 -2.5
189,264 - 12810 mRNA_4442 0.43 -0.9
189,375 + 12810 mRNA_4442 0.51 -0.1
189,382 - 12810 mRNA_4442 0.51 0.5