Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4439

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4438: 12806 - Hypothetical Protein, at 182518 to 183149 12806 mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183343 to 183707 12807 mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183991 to 186593 12808

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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182,427 - 0.9
182,439 - -0.8
182,459 + -0.5
182,492 + -1.0
182,519 + 0.6
182,534 + -0.5
182,594 + 12806 mRNA_4438 0.12 -2.1
182,610 + 12806 mRNA_4438 0.15 0.4
182,754 + 12806 mRNA_4438 0.37 0.6
182,770 - 12806 mRNA_4438 0.40 -0.2
182,892 + 12806 mRNA_4438 0.59 -2.4
183,039 + 12806 mRNA_4438 0.82 0.3
183,067 - 12806 mRNA_4438 0.87 0.7
183,147 - 1.4
183,188 + 0.9
183,230 + 0.2
183,232 - 1.9
183,331 - -0.2
183,384 + 12807 mRNA_4439 0.11 -0.8
183,435 - 12807 mRNA_4439 0.25 -0.9
183,435 - 12807 mRNA_4439 0.25 0.4
183,488 + 12807 mRNA_4439 0.40 -0.1
183,737 + -0.1
183,768 - 0.2
183,802 - 0.2
183,943 + 1.3
183,953 + 2.3