Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4434

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4433: 12801 - Hypothetical Protein, at 173129 to 173293 12801 mRNA_4434: 12802 - Hypothetical Protein, at 173959 to 175087 12802 mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175416 to 177921 12803

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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173,001 + 0.5
173,006 - 1.2
173,007 + 0.2
173,044 + 1.7
173,216 - 12801 mRNA_4433 0.53 0.1
173,483 - -0.7
173,513 - -0.4
173,641 - 1.2
173,749 + -2.5
173,901 - 0.4
173,906 - 0.3
174,054 + -0.3
174,057 + 0.9
174,081 - 12802 mRNA_4434 0.11 0.9
174,117 + 12802 mRNA_4434 0.14 1.3
174,220 - 12802 mRNA_4434 0.23 0.5
174,228 + 12802 mRNA_4434 0.24 -1.2
174,355 - 12802 mRNA_4434 0.35 1.2
174,362 + 12802 mRNA_4434 0.36 2.6
174,368 + 12802 mRNA_4434 0.36 -0.8
174,411 + 12802 mRNA_4434 0.40 3.2
174,412 + 12802 mRNA_4434 0.40 0.3
174,703 + 12802 mRNA_4434 0.66 1.5
174,773 - 12802 mRNA_4434 0.72 -1.8
174,907 - 12802 mRNA_4434 0.84 -0.9
174,915 + 12802 mRNA_4434 0.85 -0.3
174,941 - 12802 mRNA_4434 0.87 0.2
174,947 + 12802 mRNA_4434 0.88 0.4
175,090 + 0.3
175,090 - -2.0
175,218 + -0.3
175,223 + -0.2
175,390 + 1.8
175,485 + -0.1
175,544 - 1.4
175,554 + 0.6
175,667 - 12803 mRNA_4435 0.10 1.8
175,815 + 12803 mRNA_4435 0.16 0.5
175,945 + 12803 mRNA_4435 0.21 1.4