Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4426

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4425: 12793 - KOG3844 Predicted component of NuA3 histone acetyltransferase complex, at 153897 to 156025 12793 mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156367 to 159071 12794 mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160068 to 161346 12795

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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155,449 - 12793 mRNA_4425 0.73 -0.7
155,455 - 12793 mRNA_4425 0.73 0.6
155,497 - 12793 mRNA_4425 0.75 1.0
155,640 + 12793 mRNA_4425 0.82 -1.5
155,659 - 12793 mRNA_4425 0.83 -2.5
155,675 - 12793 mRNA_4425 0.84 0.8
155,710 - 12793 mRNA_4425 0.85 -0.1
155,760 + 12793 mRNA_4425 0.88 0.5
155,762 - 12793 mRNA_4425 0.88 1.2
155,773 - 12793 mRNA_4425 0.88 1.1
155,922 - -1.5
156,072 + -0.2
156,078 + 0.8
156,081 - 2.1
156,099 + -1.2
156,125 - 0.4
156,139 + 0.2
156,213 - -0.9
156,339 - 1.4
156,515 - 0.6
156,674 - 12794 mRNA_4426 0.11 1.1
156,852 + 12794 mRNA_4426 0.18 0.2
156,939 - 12794 mRNA_4426 0.21 0.5
157,117 + 12794 mRNA_4426 0.28 0.2
157,408 + 12794 mRNA_4426 0.38 -1.4
157,427 + 12794 mRNA_4426 0.39 0.8
157,440 - 12794 mRNA_4426 0.40 -0.2
157,520 - 12794 mRNA_4426 0.43 1.5
157,556 + 12794 mRNA_4426 0.44 1.9
157,577 + 12794 mRNA_4426 0.45 0.2
157,835 - 12794 mRNA_4426 0.54 -0.1
157,951 - 12794 mRNA_4426 0.59 1.2
158,113 - 12794 mRNA_4426 0.65 -0.5
158,259 - 12794 mRNA_4426 0.70 0.6
158,611 + 12794 mRNA_4426 0.83 3.8
159,018 - -0.1
159,074 - 3.3
159,146 - 0.2
159,230 + 0.1
159,596 + 1.3
159,873 + -0.7
159,873 - 0.7
160,010 + 1.3
160,013 - 0.8
160,025 + -0.3