Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4422

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144422 to 145671 12789 mRNA_4422: 12790 - BLAST Regulator of nonsense transcripts UPF2 [Grifola frond..., at 145767 to 149805 12790 mRNA_4423: 12791 - K09528 DNAJC8 DnaJ homolog subfamily C member 8, at 150001 to 151135 12791

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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145,813 - -1.1
145,833 + 0.4
146,084 - 0.3
148,137 - 12790 mRNA_4422 0.59 1.9
148,892 + 12790 mRNA_4422 0.77 0.7
148,953 + 12790 mRNA_4422 0.79 0.2
148,957 - 12790 mRNA_4422 0.79 0.3
149,195 + 12790 mRNA_4422 0.85 0.9
149,359 - 12790 mRNA_4422 0.89 0.7
149,457 + 0.3
149,717 + 0.3
149,832 - 2.6
149,832 - 0.0
149,841 + 1.5
149,841 - 0.6
149,841 - 1.4
149,925 + 0.3
149,931 + -1.3
149,935 - 0.4
149,936 - 1.0