Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4412

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117633 to 120365 12779 mRNA_4412: 12780 - SUPERFAMILY--SSF52047, at 120442 to 126387 12780 mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126520 to 129077 12781

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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120,247 + -0.1
120,320 + 0.1
120,472 + 1.3
120,509 - -0.8
120,811 + -0.8
120,955 - -2.4
120,956 - -0.8
121,062 - 12780 mRNA_4412 0.10 2.0
121,491 - 12780 mRNA_4412 0.18 -1.1
121,645 + 12780 mRNA_4412 0.20 -0.3
121,647 + 12780 mRNA_4412 0.20 0.1
121,731 - 12780 mRNA_4412 0.22 -1.1
121,777 - 12780 mRNA_4412 0.22 -0.4
121,864 - 12780 mRNA_4412 0.24 -0.1
121,916 - 12780 mRNA_4412 0.25 -0.6
122,015 + 12780 mRNA_4412 0.26 -0.3
122,049 - 12780 mRNA_4412 0.27 -0.2
122,059 + 12780 mRNA_4412 0.27 1.1
122,085 - 12780 mRNA_4412 0.28 -0.2
122,096 + 12780 mRNA_4412 0.28 -0.2
122,098 + 12780 mRNA_4412 0.28 0.9
122,211 - 12780 mRNA_4412 0.30 1.9
122,489 - 12780 mRNA_4412 0.34 1.3
122,621 - 12780 mRNA_4412 0.37 1.7
122,808 + 12780 mRNA_4412 0.40 0.6
122,988 + 12780 mRNA_4412 0.43 -1.2
123,235 + 12780 mRNA_4412 0.47 0.9
123,280 + 12780 mRNA_4412 0.48 1.7
123,547 + 12780 mRNA_4412 0.52 1.4
123,571 - 12780 mRNA_4412 0.53 0.6
123,591 + 12780 mRNA_4412 0.53 -0.3
123,715 + 12780 mRNA_4412 0.55 -0.9
123,842 + 12780 mRNA_4412 0.57 0.4
123,862 + 12780 mRNA_4412 0.58 2.6
123,862 + 12780 mRNA_4412 0.58 1.7
124,015 + 12780 mRNA_4412 0.60 0.4
124,048 + 12780 mRNA_4412 0.61 0.5
124,099 + 12780 mRNA_4412 0.62 -1.3
124,102 - 12780 mRNA_4412 0.62 1.7
124,116 - 12780 mRNA_4412 0.62 0.9
124,133 - 12780 mRNA_4412 0.62 1.3
124,177 - 12780 mRNA_4412 0.63 0.3
124,237 - 12780 mRNA_4412 0.64 1.4
124,280 + 12780 mRNA_4412 0.65 2.5
124,388 - 12780 mRNA_4412 0.66 2.0
124,388 + 12780 mRNA_4412 0.66 0.6
124,445 - 12780 mRNA_4412 0.67 -1.1
124,539 + 12780 mRNA_4412 0.69 -0.2
124,568 - 12780 mRNA_4412 0.69 -0.2
124,626 - 12780 mRNA_4412 0.70 -1.6
124,810 + 12780 mRNA_4412 0.73 2.4
124,865 + 12780 mRNA_4412 0.74 -1.9
125,004 + 12780 mRNA_4412 0.77 -0.1
125,016 + 12780 mRNA_4412 0.77 -1.1
125,039 - 12780 mRNA_4412 0.77 0.2
125,039 - 12780 mRNA_4412 0.77 2.0
125,039 - 12780 mRNA_4412 0.77 0.3
125,045 + 12780 mRNA_4412 0.77 0.1
125,164 + 12780 mRNA_4412 0.79 -0.2
125,795 - 0.4
125,803 + 2.5
125,806 - 0.6
125,871 + 0.1
126,051 + -2.2
126,051 - -0.5
126,057 + 2.2
126,157 - 2.6
126,240 + -0.4
126,358 + 1.1
126,492 - -0.9
126,506 + -1.4
126,527 + -1.3
126,600 - 1.7
126,817 - 12781 mRNA_4413 0.12 -1.4
126,880 + 12781 mRNA_4413 0.14 -0.3
126,957 + 12781 mRNA_4413 0.17 0.7
127,029 + 12781 mRNA_4413 0.20 0.5
127,209 + 12781 mRNA_4413 0.27 0.8
127,275 + 12781 mRNA_4413 0.30 -1.0