Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4410

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113128 to 114818 12777 mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115129 to 117248 12778 mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117633 to 120365 12779

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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114,379 - 12777 mRNA_4409 0.74 -0.1
114,510 + 12777 mRNA_4409 0.82 0.9
114,691 + 0.3
114,708 - -1.2
114,871 + 1.7
114,873 + 0.1
115,005 + 1.8
115,556 + 12778 mRNA_4410 0.20 -0.7
115,565 + 12778 mRNA_4410 0.21 -0.2
115,830 - 12778 mRNA_4410 0.33 1.1
115,834 + 12778 mRNA_4410 0.33 0.7
115,863 - 12778 mRNA_4410 0.35 0.1
115,943 - 12778 mRNA_4410 0.38 1.4
115,950 + 12778 mRNA_4410 0.39 0.0
116,444 - 12778 mRNA_4410 0.62 -0.1
116,531 - 12778 mRNA_4410 0.66 1.2
116,801 - 12778 mRNA_4410 0.79 0.7
116,861 - 12778 mRNA_4410 0.82 1.2
116,895 + 12778 mRNA_4410 0.83 2.3
117,134 + 1.5
117,145 + -1.9
117,165 + 0.1
117,475 + 0.2
117,484 - -0.4
117,603 - 0.4