Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4409

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111207 to 112706 12776 mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113128 to 114818 12777 mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115129 to 117248 12778

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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112,169 + 12776 mRNA_4408 0.64 -1.6
112,435 - 12776 mRNA_4408 0.82 3.4
112,436 + 12776 mRNA_4408 0.82 3.3
112,560 - 0.2
112,745 - 0.0
112,888 + 3.1
112,998 - -0.3
113,025 + 1.3
113,046 - 0.6
113,055 - -0.3
113,075 + 0.1
113,075 - 0.9
113,077 + 0.6
113,153 + -0.2
113,218 + -0.8
113,313 - 12777 mRNA_4409 0.11 -0.1
113,567 + 12777 mRNA_4409 0.26 -0.9
113,567 + 12777 mRNA_4409 0.26 1.7
113,753 + 12777 mRNA_4409 0.37 1.9
113,780 + 12777 mRNA_4409 0.39 -1.3
113,806 + 12777 mRNA_4409 0.40 1.4
113,838 + 12777 mRNA_4409 0.42 0.3
113,925 - 12777 mRNA_4409 0.47 -0.8
113,960 - 12777 mRNA_4409 0.49 -0.9
114,379 - 12777 mRNA_4409 0.74 -0.1
114,510 + 12777 mRNA_4409 0.82 0.9
114,691 + 0.3
114,708 - -1.2
114,871 + 1.7
114,873 + 0.1
115,005 + 1.8
115,556 + 12778 mRNA_4410 0.20 -0.7
115,565 + 12778 mRNA_4410 0.21 -0.2