Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4407

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106855 to 109155 12774 mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109306 to 110822 12775 mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111207 to 112706 12776

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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108,625 + 12774 mRNA_4406 0.77 2.6
108,710 - 12774 mRNA_4406 0.81 -1.7
108,723 + 12774 mRNA_4406 0.81 -0.1
108,846 - 12774 mRNA_4406 0.87 0.2
108,915 + 12774 mRNA_4406 0.90 0.5
108,927 + 0.1
108,932 - 0.7
108,938 - 0.0
108,981 - 1.0
109,076 - 0.2
109,077 - 1.3
109,211 - 0.5
109,228 - -0.6
109,246 - 0.5
109,251 + 1.6
109,252 + 0.5
109,252 + -0.4
109,254 - 0.4
109,266 + 1.8
109,278 + 1.3
109,332 + 2.3
109,347 - 0.3
109,361 - 1.7
109,375 + -3.2
109,501 - 12775 mRNA_4407 0.13 -0.0
109,553 - 12775 mRNA_4407 0.16 -0.4
109,593 + 12775 mRNA_4407 0.19 0.3
109,604 - 12775 mRNA_4407 0.20 1.3
109,647 - 12775 mRNA_4407 0.22 1.2
109,779 - 12775 mRNA_4407 0.31 -0.6
109,803 + 12775 mRNA_4407 0.33 0.0
109,891 - 12775 mRNA_4407 0.39 1.6
110,055 - 12775 mRNA_4407 0.49 -0.0
110,083 - 12775 mRNA_4407 0.51 -0.2
110,390 - 12775 mRNA_4407 0.71 -1.9
110,534 + 12775 mRNA_4407 0.81 2.0
110,566 + 12775 mRNA_4407 0.83 1.9
110,571 - 12775 mRNA_4407 0.83 1.6
110,986 + -0.6
110,993 - 1.5
111,649 - 12776 mRNA_4408 0.29 -1.1
111,713 - 12776 mRNA_4408 0.34 0.8