Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4403

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4401: 12769 - KOG3303 Predicted alpha-helical protein, potentially involved in replication/repair, at 97723 to 98507 12769 mRNA_4402: 12770 - Hypothetical Protein, at 98627 to 98893 12770 mRNA_4403: 12771 - Hypothetical Protein, at 99143 to 102687 12771 mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103053 to 104397 12772

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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98,550 - 1.4
98,662 + 12770 mRNA_4402 0.13 1.3
98,697 + 12770 mRNA_4402 0.26 1.1
98,697 + 12770 mRNA_4402 0.26 -1.2
98,709 + 12770 mRNA_4402 0.31 1.4
98,836 - 12770 mRNA_4402 0.78 -0.1
98,981 - 0.8
99,140 - 0.5
99,145 - 4.0
99,146 - 3.0
99,157 + 0.6
99,169 + 1.0
99,185 + 0.8
99,200 + 0.5
99,266 + -0.5
99,268 + 1.4
99,276 + -0.4
99,310 + -0.4
99,335 + 0.8
99,444 - -0.4
99,465 - 0.8
99,475 - -0.1
99,480 + 1.5
99,632 - 12771 mRNA_4403 0.14 1.6
100,029 - 12771 mRNA_4403 0.25 0.1
100,367 - 12771 mRNA_4403 0.35 1.4
100,438 - 12771 mRNA_4403 0.37 -0.5
100,485 + 12771 mRNA_4403 0.38 1.9
101,002 - 12771 mRNA_4403 0.52 -0.9
101,079 + 12771 mRNA_4403 0.55 0.4
101,117 + 12771 mRNA_4403 0.56 -0.8
101,217 + 12771 mRNA_4403 0.59 0.0
101,301 + 12771 mRNA_4403 0.61 0.1
101,518 - 12771 mRNA_4403 0.67 0.2
101,829 + 12771 mRNA_4403 0.76 0.5
102,101 + 12771 mRNA_4403 0.83 -0.5
102,104 + 12771 mRNA_4403 0.84 -2.3
102,122 - 12771 mRNA_4403 0.84 -1.1
102,276 - 12771 mRNA_4403 0.88 0.9
102,340 + -0.8
102,417 + 0.8
102,422 + -0.5
102,580 + 1.9
102,706 + -0.6
102,996 + -0.0
103,171 + 0.7
103,176 - 0.2
103,649 + 12772 mRNA_4404 0.44 0.6
103,649 + 12772 mRNA_4404 0.44 -0.5