Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4400

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4399: 12767 - HMMPfam-CFEM domain-PF05730, at 93703 to 94660 12767 mRNA_4400: 12768 - Hypothetical Protein, at 95230 to 97148 12768 mRNA_4401: 12769 - KOG3303 Predicted alpha-helical protein, potentially involved in replication/repair, at 97723 to 98507 12769

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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94,273 + 12767 mRNA_4399 0.59 0.8
94,433 - 12767 mRNA_4399 0.76 -1.2
94,445 + 12767 mRNA_4399 0.77 1.0
94,459 - 12767 mRNA_4399 0.79 2.0
94,574 - 2.0
94,604 - 0.2
95,006 + -2.8
95,145 + -0.2
95,163 + 2.0
95,172 + 2.0
95,273 + 0.9
95,468 + 12768 mRNA_4400 0.12 -1.7
96,195 + 12768 mRNA_4400 0.50 0.3
96,718 + 12768 mRNA_4400 0.78 0.1
96,941 - 12768 mRNA_4400 0.89 -1.5
96,965 + -1.9
96,986 - -0.1
97,076 - 0.7
97,135 + 1.3
97,146 + 0.8
97,251 + 0.5
97,337 - 1.7
97,411 + 0.0
97,484 + -1.0
97,513 + 1.6