Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4399

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4398: 12766 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 91356 to 92891 12766 mRNA_4399: 12767 - HMMPfam-CFEM domain-PF05730, at 93703 to 94660 12767 mRNA_4400: 12768 - Hypothetical Protein, at 95230 to 97148 12768

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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92,706 + 12766 mRNA_4398 0.88 -0.3
92,783 + -0.6
92,785 - -0.2
92,809 + -1.3
92,916 + -0.3
92,925 + 0.3
92,927 - 3.6
92,932 - 0.2
92,950 - -0.2
92,962 - -0.3
92,964 + -0.4
92,967 - 0.3
92,972 - 0.2
92,989 - 1.4
93,028 + -0.3
93,095 + -0.0
93,121 - -1.0
93,151 - 1.2
93,265 - 1.1
93,268 - 0.5
93,269 - 1.6
93,283 - -0.6
93,284 + -0.9
93,416 - -0.3
93,565 + 1.6
93,966 - 12767 mRNA_4399 0.27 -0.5
93,999 - 12767 mRNA_4399 0.31 0.8
94,018 - 12767 mRNA_4399 0.33 2.9
94,273 + 12767 mRNA_4399 0.59 0.8
94,433 - 12767 mRNA_4399 0.76 -1.2
94,445 + 12767 mRNA_4399 0.77 1.0
94,459 - 12767 mRNA_4399 0.79 2.0
94,574 - 2.0
94,604 - 0.2
95,006 + -2.8
95,145 + -0.2
95,163 + 2.0
95,172 + 2.0
95,273 + 0.9
95,468 + 12768 mRNA_4400 0.12 -1.7