Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4394

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82282 to 84844 12761 mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85046 to 87560 12762 mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88066 to 89251 12763

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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84,272 - 12761 mRNA_4393 0.78 0.0
84,523 + 12761 mRNA_4393 0.87 3.5
84,662 + 0.2
84,830 - -0.5
84,946 - 0.3
86,040 + 12762 mRNA_4394 0.40 0.1
86,341 - 12762 mRNA_4394 0.51 -0.7
86,580 + 12762 mRNA_4394 0.61 0.9
86,732 + 12762 mRNA_4394 0.67 0.4
86,740 + 12762 mRNA_4394 0.67 1.7
86,847 - 12762 mRNA_4394 0.72 0.1
86,884 - 12762 mRNA_4394 0.73 0.5
87,004 - 12762 mRNA_4394 0.78 -0.4
87,307 - 12762 mRNA_4394 0.90 2.4
87,330 - 0.3
87,330 - 0.3
87,331 - 1.6
87,449 + 0.7
87,461 + 1.3
87,470 + -0.0
87,503 + -1.6
87,628 - -1.6
87,652 - 1.3
87,674 + 1.8
87,931 + 0.1
87,999 + 0.3
88,149 - -0.0