Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4385

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65499 to 68176 12752 mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68273 to 69417 12753 mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70020 to 71335 12754

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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67,280 - 12752 mRNA_4384 0.67 -1.0
67,638 - 12752 mRNA_4384 0.80 -0.9
67,885 - 12752 mRNA_4384 0.89 0.5
67,887 - 12752 mRNA_4384 0.89 0.3
67,920 - 1.6
68,005 + -1.5
68,016 + -0.8
68,017 + -0.1
68,086 - 2.7
68,087 - 2.2
68,090 - -0.2
68,099 + -0.5
68,109 - -0.6
68,216 + -2.0
68,241 - 0.7
68,338 + -1.4
68,503 + 12753 mRNA_4385 0.20 -0.4
68,536 + 12753 mRNA_4385 0.23 -1.3
68,648 - 12753 mRNA_4385 0.33 0.6
68,731 - 12753 mRNA_4385 0.40 -0.7
68,772 + 12753 mRNA_4385 0.44 -1.0
69,019 - 12753 mRNA_4385 0.65 -0.0
69,022 - 12753 mRNA_4385 0.65 0.4
69,030 + 12753 mRNA_4385 0.66 0.5
69,331 - 1.7
69,361 + -0.3
69,372 - -0.1
69,431 - 0.2
69,483 + 1.7
69,513 - -0.5
69,526 - 2.8
69,563 + 0.1
69,621 + 0.1
69,710 + -0.5
70,023 + -1.0