Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4384

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4383: 12751 - Hypothetical Protein, at 63561 to 65177 12751 mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65499 to 68176 12752 mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68273 to 69417 12753

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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64,638 - 12751 mRNA_4383 0.67 -0.9
64,656 - 12751 mRNA_4383 0.68 0.3
64,809 - 12751 mRNA_4383 0.77 -0.4
64,829 + 12751 mRNA_4383 0.78 0.4
64,830 - 12751 mRNA_4383 0.78 1.7
64,974 - 12751 mRNA_4383 0.87 0.4
65,093 + 1.1
65,101 - 1.2
65,128 - 0.5
65,136 + -1.7
65,266 + 2.0
65,323 - 3.4
65,390 - 4.6
65,392 + 0.6
65,434 + 1.8
65,439 + -2.3
65,441 + 0.4
65,443 - -0.2
65,728 - -2.9
65,875 - 12752 mRNA_4384 0.14 0.9
65,951 + 12752 mRNA_4384 0.17 -0.6
65,960 + 12752 mRNA_4384 0.17 3.1
66,171 - 12752 mRNA_4384 0.25 0.5
66,250 + 12752 mRNA_4384 0.28 -2.2
66,293 + 12752 mRNA_4384 0.30 -2.8
66,346 + 12752 mRNA_4384 0.32 -1.1
66,733 - 12752 mRNA_4384 0.46 0.1
66,739 - 12752 mRNA_4384 0.46 0.4
66,892 + 12752 mRNA_4384 0.52 -0.3
67,043 + 12752 mRNA_4384 0.58 -0.4
67,280 - 12752 mRNA_4384 0.67 -1.0
67,638 - 12752 mRNA_4384 0.80 -0.9
67,885 - 12752 mRNA_4384 0.89 0.5
67,887 - 12752 mRNA_4384 0.89 0.3
67,920 - 1.6
68,005 + -1.5
68,016 + -0.8
68,017 + -0.1
68,086 - 2.7
68,087 - 2.2
68,090 - -0.2
68,099 + -0.5
68,109 - -0.6
68,216 + -2.0
68,241 - 0.7
68,338 + -1.4
68,503 + 12753 mRNA_4385 0.20 -0.4
68,536 + 12753 mRNA_4385 0.23 -1.3
68,648 - 12753 mRNA_4385 0.33 0.6
68,731 - 12753 mRNA_4385 0.40 -0.7
68,772 + 12753 mRNA_4385 0.44 -1.0
69,019 - 12753 mRNA_4385 0.65 -0.0
69,022 - 12753 mRNA_4385 0.65 0.4
69,030 + 12753 mRNA_4385 0.66 0.5