Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4376

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49826 to 51100 12744

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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48,905 + 12743 mRNA_4375 0.84 -1.5
49,014 + 12743 mRNA_4375 0.87 -0.8
49,028 - 12743 mRNA_4375 0.88 0.3
49,176 + 0.1
49,334 - -0.4
49,348 + 0.5
49,351 - 0.9
49,397 - 0.7
49,415 - 0.7
49,433 - -0.6
49,446 - 1.5
49,628 - -0.2
49,747 - -0.0
49,901 + 1.0
50,136 + 12744 mRNA_4376 0.24 1.3
50,139 - 12744 mRNA_4376 0.25 -2.0
50,466 - 12744 mRNA_4376 0.50 1.8
50,476 + 12744 mRNA_4376 0.51 0.8
50,476 + 12744 mRNA_4376 0.51 1.3
50,589 + 12744 mRNA_4376 0.60 -3.1
50,625 - 12744 mRNA_4376 0.63 1.2
50,785 + 12744 mRNA_4376 0.75 1.0
50,788 + 12744 mRNA_4376 0.75 1.5
50,794 + 12744 mRNA_4376 0.76 0.2
50,908 + 12744 mRNA_4376 0.85 -0.0
50,908 + 12744 mRNA_4376 0.85 -1.5
50,908 + 12744 mRNA_4376 0.85 -0.3
51,105 - 0.1
51,157 + 0.3
51,246 + 0.1
51,347 - -0.3
51,378 + -0.1
51,412 + -0.6
51,564 + 0.1
51,568 - -0.1
51,580 + 1.1
51,702 + 0.3
51,713 - 2.0
51,718 + -0.4
52,007 + -0.0