Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4375

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49826 to 51100 12744

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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45,445 + 12742 mRNA_4374 0.80 -1.3
45,452 - 12742 mRNA_4374 0.80 0.4
45,462 + 12742 mRNA_4374 0.80 3.0
45,471 - 12742 mRNA_4374 0.81 0.1
45,741 - 12742 mRNA_4374 0.90 -0.3
45,744 - 1.4
45,744 + 0.4
45,773 + -0.1
45,906 + 0.3
45,912 - 0.1
45,918 - 0.1
45,996 - 2.3
46,018 + 1.0
46,034 - -0.8
46,055 - 0.3
46,059 + 0.7
46,060 + -0.2
46,074 + 0.3
46,155 - -0.6
46,186 + 1.6
46,189 - 0.0
46,191 + 1.0
46,192 + -1.0
46,195 - -1.0
46,201 + -0.4
46,202 + 0.3
46,203 - 1.0
46,205 + 0.6
46,208 - -1.7
46,208 - 0.0
46,217 + -1.3
46,217 + 0.3
46,219 - 0.0
46,227 - 0.1
46,230 + -0.9
46,233 + 0.4
46,235 + -1.2
46,237 - -1.5
46,237 + 3.6
46,287 + 0.2
46,334 + 0.1
46,342 - -0.3
46,346 + -1.8
46,355 + 0.6
46,355 - 1.5
46,367 + 1.0
46,367 + 0.5
46,367 - 1.9
46,368 - -1.2
46,369 - -1.6
46,383 - 0.2
46,384 + 1.5
46,387 + -1.6
46,623 - 0.2
46,759 + 12743 mRNA_4375 0.13 2.3
46,940 - 12743 mRNA_4375 0.19 -0.2
46,947 - 12743 mRNA_4375 0.20 0.0
46,956 + 12743 mRNA_4375 0.20 0.3
46,976 + 12743 mRNA_4375 0.21 2.1
47,119 + 12743 mRNA_4375 0.25 -0.1
47,155 - 12743 mRNA_4375 0.26 2.0
47,579 + 12743 mRNA_4375 0.40 -0.4
47,664 + 12743 mRNA_4375 0.43 0.6
47,758 + 12743 mRNA_4375 0.46 -0.2
47,837 - 12743 mRNA_4375 0.49 1.0
47,956 + 12743 mRNA_4375 0.53 0.6
48,013 + 12743 mRNA_4375 0.55 -1.2
48,024 - 12743 mRNA_4375 0.55 -0.1
48,445 + 12743 mRNA_4375 0.69 1.6
48,715 - 12743 mRNA_4375 0.78 1.4
48,716 - 12743 mRNA_4375 0.78 1.0
48,905 + 12743 mRNA_4375 0.84 -1.5
49,014 + 12743 mRNA_4375 0.87 -0.8
49,028 - 12743 mRNA_4375 0.88 0.3
49,176 + 0.1
49,334 - -0.4
49,348 + 0.5
49,351 - 0.9
49,397 - 0.7
49,415 - 0.7
49,433 - -0.6
49,446 - 1.5
49,628 - -0.2
49,747 - -0.0
49,901 + 1.0
50,136 + 12744 mRNA_4376 0.24 1.3
50,139 - 12744 mRNA_4376 0.25 -2.0