Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4372

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38452 to 41065 12740 mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41270 to 42990 12741

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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37,732 + 0.2
37,844 - 0.3
37,909 - -0.3
37,948 + -0.5
38,015 - 1.3
38,046 - -0.4
38,193 - 2.9
38,210 + 0.1
38,214 - 0.6
38,230 + -0.8
38,251 + 0.7
38,263 + -0.5
38,283 + -0.4
38,372 + -3.0
38,651 + -2.5
38,942 - 12740 mRNA_4372 0.19 1.5
38,957 - 12740 mRNA_4372 0.19 -0.6
39,183 - 12740 mRNA_4372 0.28 3.5
39,190 + 12740 mRNA_4372 0.28 -0.5
39,385 - 12740 mRNA_4372 0.36 0.7
39,420 - 12740 mRNA_4372 0.37 0.5
39,474 - 12740 mRNA_4372 0.39 -0.1
39,726 - 12740 mRNA_4372 0.49 -0.1
40,017 - 12740 mRNA_4372 0.60 1.0
40,418 + 12740 mRNA_4372 0.75 -1.5
40,539 - 12740 mRNA_4372 0.80 -1.3
40,543 - 12740 mRNA_4372 0.80 -0.6
40,856 + 0.7
40,979 + -2.3
41,037 + -0.5
41,124 - -0.6
41,125 - -0.4
41,127 + 1.0
41,129 + -0.4
41,136 - 1.4
41,137 + -0.3
41,137 + 0.2
41,138 - 0.2
41,139 - 0.4
41,139 + 2.1
41,141 - 0.9
41,152 - 0.5
41,154 + -0.1
41,156 - 0.1
41,156 - -0.5
41,157 - -0.1
41,159 + 0.2
41,163 + 0.1
41,163 + 1.3
41,163 - -0.7
41,166 - 0.3
41,166 + 1.8
41,171 + 1.5
41,200 - -0.1
41,222 + 0.8
41,233 - -1.4
41,234 - 1.1
41,254 + -0.1
41,256 - 0.5
41,264 + -1.0
41,269 + 0.2
41,355 + 1.0
41,382 + 0.5
41,382 + 0.1
41,397 + 2.0
41,430 - -1.0
41,490 + 12741 mRNA_4373 0.13 0.9
41,512 - 12741 mRNA_4373 0.14 1.3
41,516 - 12741 mRNA_4373 0.14 -0.0
41,783 + 12741 mRNA_4373 0.30 0.6
41,851 - 12741 mRNA_4373 0.34 -0.9
41,864 + 12741 mRNA_4373 0.35 -0.9
41,870 + 12741 mRNA_4373 0.35 0.1
41,937 + 12741 mRNA_4373 0.39 -1.1