Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4371

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30221 to 32027 12738 mRNA_4371: 12739 - K10877 RAD54B DNA repair and recombination protein RAD54B, at 32512 to 35317 12739

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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31,675 - 12738 mRNA_4370 0.80 2.1
31,682 + 12738 mRNA_4370 0.81 1.2
31,705 - 12738 mRNA_4370 0.82 -0.4
31,810 - 12738 mRNA_4370 0.88 0.5
31,920 + -1.1
31,953 - 0.5
32,084 + 0.1
32,104 - 0.9
32,105 + 1.7
32,124 - 0.6
32,126 + 1.8
32,130 + -1.0
32,130 + 0.3
32,132 - 2.1
32,133 - 0.2
32,134 - -0.2
32,157 - -1.1
32,198 + 1.8
32,251 - 1.6
32,257 - -0.0
32,260 - -0.2
32,260 - -1.9
32,261 - 1.4
32,263 - 0.5
32,287 - 1.3
32,311 + 1.6
32,318 + -1.4
32,328 + 0.4
32,437 - -0.6
32,455 - -0.1
32,524 - -0.3
32,639 - 0.5
32,662 + 2.1
32,664 + 2.4
32,696 - 0.5
32,766 - 0.3
32,815 + 12739 mRNA_4371 0.11 2.2
32,993 - 12739 mRNA_4371 0.17 -1.4
33,267 - 12739 mRNA_4371 0.27 -0.6
33,394 + 12739 mRNA_4371 0.31 -1.3
33,406 + 12739 mRNA_4371 0.32 1.2
33,561 + 12739 mRNA_4371 0.37 1.0
33,639 + 12739 mRNA_4371 0.40 -0.3
33,662 - 12739 mRNA_4371 0.41 0.2
33,682 + 12739 mRNA_4371 0.42 -2.1
34,904 + 12739 mRNA_4371 0.85 2.4
34,969 - 12739 mRNA_4371 0.88 -0.8
34,986 + 12739 mRNA_4371 0.88 -0.0
35,006 + 12739 mRNA_4371 0.89 0.8
35,007 + 12739 mRNA_4371 0.89 -0.9
35,158 + 2.7
35,159 - 0.3
35,213 - -1.0
35,416 + 2.5
35,453 + 0.9
36,005 - 0.6
36,023 + -0.2
36,120 + 1.4
36,196 + 0.0