Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4360

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4359: 12727 - Hypothetical Protein, at 194 to 736 12727 mRNA_4360: 12728 - Hypothetical Protein, at 964 to 3087 12728

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + -1.8
34 + 1.6
36 + 3.5
40 + 1.2
106 - -0.3
115 + 1.4
156 - 0.4
162 + 0.9
170 + -0.2
318 + 12727 mRNA_4359 0.23 1.5
397 + 12727 mRNA_4359 0.37 0.2
440 + 12727 mRNA_4359 0.45 1.6
450 + 12727 mRNA_4359 0.47 0.8
491 + 12727 mRNA_4359 0.55 1.2
494 - 12727 mRNA_4359 0.55 -0.3
500 - 12727 mRNA_4359 0.56 0.2
513 + 12727 mRNA_4359 0.59 0.9
527 - 12727 mRNA_4359 0.61 -0.0
535 + 12727 mRNA_4359 0.63 -0.4
537 - 12727 mRNA_4359 0.63 0.8
573 - 12727 mRNA_4359 0.70 0.9
575 - 12727 mRNA_4359 0.70 -0.3
575 - 12727 mRNA_4359 0.70 0.0
585 + 12727 mRNA_4359 0.72 -0.3
627 - 12727 mRNA_4359 0.80 3.2
629 + 12727 mRNA_4359 0.80 0.8
632 + 12727 mRNA_4359 0.81 0.1
655 + 12727 mRNA_4359 0.85 1.8
657 - 12727 mRNA_4359 0.85 1.5
666 + 12727 mRNA_4359 0.87 -0.5
837 + -0.3
866 + 0.5
966 + -0.6
1,080 + 3.6
1,091 + 0.3
1,091 + 0.2
1,092 + -0.9
1,119 + 1.9
1,180 - 12728 mRNA_4360 0.10 1.9
1,185 - 12728 mRNA_4360 0.10 0.6
1,186 + 12728 mRNA_4360 0.10 0.9
1,262 + 12728 mRNA_4360 0.14 0.0
1,362 + 12728 mRNA_4360 0.19 0.3
1,365 - 12728 mRNA_4360 0.19 -0.0
1,368 - 12728 mRNA_4360 0.19 -0.9
1,381 + 12728 mRNA_4360 0.20 0.1
1,539 - 12728 mRNA_4360 0.27 2.3
1,589 + 12728 mRNA_4360 0.29 -2.3
1,630 + 12728 mRNA_4360 0.31 0.1
1,688 + 12728 mRNA_4360 0.34 1.6
1,692 + 12728 mRNA_4360 0.34 0.3
1,698 - 12728 mRNA_4360 0.35 0.8
1,699 + 12728 mRNA_4360 0.35 0.4
1,763 + 12728 mRNA_4360 0.38 1.8
1,788 + 12728 mRNA_4360 0.39 0.2
1,796 + 12728 mRNA_4360 0.39 -0.2
1,867 + 12728 mRNA_4360 0.43 -0.1
2,010 + 12728 mRNA_4360 0.49 0.3
2,037 + 12728 mRNA_4360 0.51 -0.5
2,077 - 12728 mRNA_4360 0.52 2.4
2,125 + 12728 mRNA_4360 0.55 1.0
2,128 - 12728 mRNA_4360 0.55 -0.2
2,222 + 12728 mRNA_4360 0.59 -0.9
2,224 - 12728 mRNA_4360 0.59 1.9
2,280 + 12728 mRNA_4360 0.62 0.5
2,303 + 12728 mRNA_4360 0.63 -2.5
2,354 + 12728 mRNA_4360 0.65 -0.2
2,357 - 12728 mRNA_4360 0.66 -1.1
2,378 - 12728 mRNA_4360 0.67 3.3
2,396 + 12728 mRNA_4360 0.67 1.0
2,447 - 12728 mRNA_4360 0.70 -2.6
2,549 + 12728 mRNA_4360 0.75 -0.1
2,681 + 12728 mRNA_4360 0.81 -0.0
2,991 + 0.6
3,097 - -0.4
3,106 + 1.7
3,107 + 2.4
3,152 + 0.6
3,276 + 0.3
3,398 + -0.8
3,399 + 1.2
3,417 + 1.4
3,516 + 3.0
3,568 - 1.3
3,574 - 1.7
3,578 + -0.2
3,632 + 0.1
3,691 + 0.5
3,692 - -1.4
3,695 - 1.3
3,719 - 0.7
3,759 + 1.4
3,775 + 0.8
3,843 - 1.0
3,845 - -0.3
3,845 - 1.0
3,850 + 0.3
3,852 + -0.5
3,859 + -1.4