Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4345

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4344: 12712 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1957687 to 1959260 12712 mRNA_4345: 12713 - K04706 PIAS1 E3 SUMO-protein ligase PIAS1, at 1959851 to 1962070 12713 mRNA_4346: 12714 - K18754 LIN28 protein lin-28, at 1962834 to 1965398 12714

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,958,980 - 12712 mRNA_4344 0.82 -0.0
1,959,342 - 0.0
1,959,382 - -2.2
1,959,391 - 2.2
1,959,396 + 1.8
1,959,417 - 0.1
1,959,430 - 1.1
1,959,431 + 1.0
1,959,436 - 0.6
1,959,444 - -0.3
1,959,446 - -0.0
1,959,447 + -0.1
1,959,457 - 1.3
1,959,471 + 0.3
1,959,475 - 1.4
1,959,538 + 0.5
1,959,557 + -0.9
1,959,568 + -1.2
1,959,568 + -0.1
1,959,569 - -0.5
1,959,570 - 1.2
1,959,578 + 0.8
1,959,581 - -0.4
1,959,591 + 0.4
1,959,598 + 1.2
1,959,600 + 1.1
1,959,633 + 0.5
1,959,651 - 1.2
1,959,685 + 1.2
1,959,685 + 1.1
1,959,716 - 1.1
1,959,730 + 0.3
1,959,773 + -0.3
1,959,790 - 0.4
1,959,797 + 3.1
1,960,027 + 0.6
1,960,032 + 1.3
1,960,037 + 0.9
1,960,188 - 12713 mRNA_4345 0.15 -0.7
1,960,200 - 12713 mRNA_4345 0.16 2.5
1,960,319 + 12713 mRNA_4345 0.21 -0.9
1,960,319 - 12713 mRNA_4345 0.21 -1.8
1,960,746 - 12713 mRNA_4345 0.40 -0.8
1,962,100 - -0.2
1,962,528 + 0.1
1,962,547 + 0.7
1,962,719 + -0.3
1,962,802 - 0.9
1,962,821 - 1.1
1,962,828 + 0.7
1,962,829 + -1.0
1,962,843 - 0.4
1,962,967 + 1.7
1,962,980 + 0.1
1,962,992 + 0.5