Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4315

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4314: 12682 - Hypothetical Protein, at 1881006 to 1883368 12682 mRNA_4315: 12683 - Hypothetical Protein, at 1883534 to 1885607 12683 mRNA_4316: 12684 - K03178 UBE1, UBA1 ubiquitin-activating enzyme E1, at 1886479 to 1890750 12684

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,882,615 - 12682 mRNA_4314 0.68 1.2
1,882,749 - 12682 mRNA_4314 0.74 1.6
1,882,794 + 12682 mRNA_4314 0.76 2.1
1,882,807 + 12682 mRNA_4314 0.76 -2.8
1,882,856 + 12682 mRNA_4314 0.78 1.0
1,882,960 - 12682 mRNA_4314 0.83 0.6
1,883,106 - 12682 mRNA_4314 0.89 -0.8
1,883,214 - 1.7
1,883,247 + -0.5
1,883,400 + -0.2
1,883,404 - -0.9
1,883,553 - -1.9
1,883,766 - 12683 mRNA_4315 0.11 2.5
1,883,791 - 12683 mRNA_4315 0.12 -1.3
1,883,827 + 12683 mRNA_4315 0.14 -0.2
1,884,099 + 12683 mRNA_4315 0.27 1.1
1,884,114 + 12683 mRNA_4315 0.28 1.3
1,884,402 - 12683 mRNA_4315 0.42 -0.3
1,884,504 - 12683 mRNA_4315 0.47 2.2
1,884,666 + 12683 mRNA_4315 0.55 1.8
1,884,693 - 12683 mRNA_4315 0.56 0.1
1,884,971 - 12683 mRNA_4315 0.69 1.2
1,885,084 + 12683 mRNA_4315 0.75 -1.4
1,885,111 - 12683 mRNA_4315 0.76 1.1
1,885,412 + 0.1
1,885,431 + 3.3
1,885,560 - 2.7
1,885,566 + 0.5
1,885,667 - 0.6
1,885,714 - -2.0
1,885,721 - -0.0
1,885,723 + 1.3
1,885,736 + 0.7
1,885,739 - 1.0
1,885,740 + 0.6
1,885,755 - -0.1
1,885,775 + -0.2
1,885,780 - 1.1
1,885,818 + -0.6
1,885,834 + -0.8
1,885,851 + -0.3
1,885,857 - 0.2
1,885,861 - -0.2
1,885,862 - -0.9
1,885,883 + -1.0
1,885,890 + 0.3
1,885,890 - -0.2
1,885,991 - 1.0
1,886,000 - 2.8
1,886,009 + -0.2
1,886,147 + -1.7
1,886,179 - -0.5
1,886,285 - -0.2
1,886,308 + 0.4
1,886,308 + 0.1
1,886,414 - 1.9
1,886,439 - 0.3
1,886,450 + -0.9
1,886,459 - 1.0