Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4299

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4298: 12666 - Hypothetical Protein, at 1831487 to 1832179 12666 mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1832408 to 1835999 12667 mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1836268 to 1838617 12668

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,831,470 - -0.1
1,831,501 - 0.0
1,831,516 - 1.4
1,831,951 - 12666 mRNA_4298 0.67 -1.4
1,832,243 + -0.6
1,832,251 + -1.0
1,832,268 - 1.0
1,832,275 + 0.6
1,832,352 + -0.2
1,832,558 + -0.3
1,832,836 + 12667 mRNA_4299 0.12 -0.3
1,833,724 + 12667 mRNA_4299 0.37 -2.5
1,836,000 + 1.0
1,836,164 + 0.0
1,836,171 + -1.8
1,836,183 + 0.8
1,836,185 - -0.7
1,836,188 + 2.6
1,836,189 + 0.2
1,836,222 + 0.1
1,836,730 + 12668 mRNA_4300 0.20 -3.2
1,836,958 - 12668 mRNA_4300 0.29 -1.5