Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4279

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4278: 12646 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1786017 to 1788218 12646 mRNA_4279: 12647 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1788409 to 1790808 12647 mRNA_4280: 12648 - HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806, at 1790909 to 1794329 12648

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,787,890 - 12646 mRNA_4278 0.85 0.1
1,787,964 - 12646 mRNA_4278 0.88 -0.5
1,788,011 + -1.6
1,788,143 + 1.7
1,788,249 - -2.7
1,788,272 + 0.4
1,788,277 + 2.0
1,788,286 + 0.6
1,788,293 - 2.4
1,788,295 - -0.2
1,788,317 - -0.4
1,788,398 + 0.1
1,788,455 - 0.5
1,788,465 - 1.0
1,788,465 - 0.9
1,788,465 + 1.7
1,788,468 + 0.8
1,788,475 + 0.9
1,789,187 - 12647 mRNA_4279 0.32 3.1
1,789,291 + 12647 mRNA_4279 0.37 -1.3
1,789,331 + 12647 mRNA_4279 0.38 1.7
1,789,343 + 12647 mRNA_4279 0.39 -0.4
1,789,351 + 12647 mRNA_4279 0.39 -1.5
1,789,351 + 12647 mRNA_4279 0.39 -0.2
1,789,623 + 12647 mRNA_4279 0.51 0.2
1,789,751 + 12647 mRNA_4279 0.56 0.5
1,789,899 - 12647 mRNA_4279 0.62 0.8
1,790,030 - 12647 mRNA_4279 0.68 1.4
1,790,208 + 12647 mRNA_4279 0.75 0.5
1,790,215 - 12647 mRNA_4279 0.75 -1.3
1,790,368 - 12647 mRNA_4279 0.82 0.6
1,790,457 - 12647 mRNA_4279 0.85 -1.4
1,790,535 + 12647 mRNA_4279 0.89 1.2
1,790,703 + 1.6
1,790,790 - 1.5
1,790,791 + -0.2
1,790,792 - 1.7
1,790,813 + 0.1
1,791,516 - 12648 mRNA_4280 0.18 -0.8