Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4266

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4265: 12633 - BLAST lytic polysaccharide monooxygenase [Cenococcum geophi..., at 1746192 to 1748005 12633 mRNA_4266: 12634 - BLAST sucrase/ferredoxin-like domain-containing protein [Rh..., at 1748531 to 1749378 12634 mRNA_4267: 12635 - K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase, at 1750251 to 1751902 12635

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,747,695 - 12633 mRNA_4265 0.83 2.6
1,747,697 - 12633 mRNA_4265 0.83 -0.0
1,748,152 - -0.5
1,748,193 + -0.6
1,748,211 - -0.5
1,748,211 - -1.9
1,748,343 - 0.7
1,748,365 + 0.2
1,748,468 - 1.7
1,748,471 + 1.7
1,748,476 + -0.1
1,748,480 + 0.2
1,748,480 + -0.2
1,748,484 - 0.3
1,748,486 + 0.6
1,748,487 + 1.6
1,748,490 + 0.9
1,748,495 + -0.4
1,748,501 + -0.3
1,748,533 + -0.3
1,748,637 + 12634 mRNA_4266 0.12 1.1
1,748,677 - 12634 mRNA_4266 0.17 -0.3
1,748,776 - 12634 mRNA_4266 0.29 1.8
1,748,801 + 12634 mRNA_4266 0.32 2.2
1,748,801 + 12634 mRNA_4266 0.32 1.1
1,748,817 + 12634 mRNA_4266 0.34 -0.0
1,749,054 - 12634 mRNA_4266 0.62 -0.7
1,749,251 - 12634 mRNA_4266 0.85 0.0
1,749,374 - 1.5
1,749,393 - -0.3
1,749,399 + -0.4
1,749,667 + -1.2
1,749,687 + 2.2
1,749,981 + -0.6
1,750,139 + 0.9