Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4254

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1718073 to 1718994 12621 mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1719227 to 1720870 12622 mRNA_4255: 12623 - HMMPfam-Dioxygenase-PF00775,SUPERFAMILY--SSF49482, at 1721312 to 1723112 12623

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,718,434 + 12621 mRNA_4253 0.39 0.5
1,718,524 - 12621 mRNA_4253 0.49 -1.8
1,718,755 - 12621 mRNA_4253 0.74 0.8
1,719,178 + -0.3
1,719,197 - -2.3
1,719,282 + 0.1
1,719,322 - 2.3
1,719,740 - 12622 mRNA_4254 0.31 0.7
1,719,859 - 12622 mRNA_4254 0.38 0.4
1,720,026 + 12622 mRNA_4254 0.49 2.9
1,720,629 - 12622 mRNA_4254 0.85 1.4
1,721,182 - -0.5
1,721,185 + 0.5
1,721,193 - -0.2
1,721,200 - -0.4
1,721,204 + 0.9
1,721,206 + 0.2
1,721,214 + -0.6
1,721,255 + 0.3
1,721,404 + -0.5
1,721,404 + -0.1