Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4245

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4244: 12612 - Hypothetical Protein, at 1700194 to 1701109 12612 mRNA_4245: 12613 - Hypothetical Protein, at 1701205 to 1702275 12613 mRNA_4246: 12614 - KOG1172 Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family), at 1702381 to 1705218 12614

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,700,407 + 12612 mRNA_4244 0.23 0.6
1,700,527 - 12612 mRNA_4244 0.36 0.5
1,700,549 - 12612 mRNA_4244 0.39 0.1
1,700,565 + 12612 mRNA_4244 0.41 -1.1
1,700,588 - 12612 mRNA_4244 0.43 -0.6
1,700,733 + 12612 mRNA_4244 0.59 1.1
1,700,860 + 12612 mRNA_4244 0.73 1.1
1,701,147 + 0.7
1,701,175 + -0.6
1,701,276 + -1.4
1,701,438 - 12613 mRNA_4245 0.22 0.0
1,701,540 - 12613 mRNA_4245 0.31 0.1
1,701,562 - 12613 mRNA_4245 0.33 -1.8
1,701,753 - 12613 mRNA_4245 0.51 0.1
1,701,954 - 12613 mRNA_4245 0.70 2.9
1,702,007 + 12613 mRNA_4245 0.75 0.2
1,702,060 - 12613 mRNA_4245 0.80 -1.5
1,702,204 - 0.2
1,702,308 - 1.6
1,702,342 - 2.1
1,702,370 + 1.6
1,702,469 - 1.6
1,702,507 + -0.7
1,702,635 - 0.3
1,702,643 - 0.2
1,702,948 - 12614 mRNA_4246 0.20 -0.3
1,702,951 + 12614 mRNA_4246 0.20 0.6