Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4237

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1685363 to 1686839 12604 mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1687514 to 1688995 12605 mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1689549 to 1691062 12606

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,686,777 - 2.0
1,686,785 + 0.7
1,686,865 + 3.2
1,686,900 - 0.6
1,686,905 - 1.0
1,686,911 - -1.7
1,686,922 - -1.0
1,686,946 + 2.5
1,686,947 + -0.1
1,686,951 + -0.2
1,686,972 - 0.4
1,686,974 + 0.8
1,686,980 + 0.6
1,687,016 - -0.3
1,687,034 + -0.3
1,687,047 - 0.9
1,687,052 - -1.0
1,687,082 + 0.4
1,687,096 + 0.5
1,687,102 - 0.9
1,687,121 - 1.3
1,687,122 + 0.1
1,687,122 + 0.2
1,687,123 - 0.8
1,687,133 + 3.7
1,687,142 + 1.5
1,687,253 + 0.6
1,687,279 + 1.4
1,687,427 - 2.5
1,687,571 - 0.1
1,687,869 + 12605 mRNA_4237 0.24 3.5
1,688,721 + 12605 mRNA_4237 0.81 2.6
1,689,026 + -1.2
1,689,349 + 2.2
1,689,761 + 12606 mRNA_4238 0.14 -0.1