Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4225

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4224: 12592 - Hypothetical Protein, at 1650679 to 1653904 12592 mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1654260 to 1655493 12593 mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1655813 to 1659134 12594

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,653,711 + 0.4
1,653,723 + 1.8
1,653,727 - 1.5
1,653,852 + 2.0
1,653,859 - -1.1
1,654,154 + 1.6
1,654,303 - 1.7
1,654,447 - 12593 mRNA_4225 0.15 1.7
1,654,498 + 12593 mRNA_4225 0.19 0.8
1,654,602 - 12593 mRNA_4225 0.28 2.1
1,654,612 + 12593 mRNA_4225 0.29 0.2
1,654,798 + 12593 mRNA_4225 0.44 1.2
1,654,928 + 12593 mRNA_4225 0.54 0.5
1,655,203 - 12593 mRNA_4225 0.76 0.4
1,655,304 + 12593 mRNA_4225 0.85 1.1
1,655,307 - 12593 mRNA_4225 0.85 -1.4
1,655,484 + 0.2
1,655,501 - 0.2
1,655,624 + 0.5
1,655,628 + -0.1
1,655,639 + 0.9
1,655,643 + 0.4
1,655,740 - 0.3
1,655,821 - -1.7
1,655,838 - 1.3
1,656,070 + 0.1
1,656,082 - 0.1
1,656,220 + 12594 mRNA_4226 0.12 0.2
1,656,230 + 12594 mRNA_4226 0.13 -0.1
1,656,231 - 12594 mRNA_4226 0.13 -1.3
1,656,231 + 12594 mRNA_4226 0.13 1.1
1,656,389 + 12594 mRNA_4226 0.17 -2.2