Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4221

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4220: 12588 - K19932 NCS1 neuronal calcium sensor 1, at 1644542 to 1645935 12588 mRNA_4221: 12589 - HMMPfam-Sodium/hydrogen exchanger family-PF00999, at 1646104 to 1647809 12589 mRNA_4222: 12590 - K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein, at 1647878 to 1648825 12590

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,645,533 - 12588 mRNA_4220 0.71 -1.0
1,645,537 - 12588 mRNA_4220 0.71 -0.0
1,645,556 - 12588 mRNA_4220 0.73 -0.4
1,645,557 + 12588 mRNA_4220 0.73 0.8
1,645,569 + 12588 mRNA_4220 0.74 -1.7
1,645,618 + 12588 mRNA_4220 0.77 2.6
1,645,667 - 12588 mRNA_4220 0.81 0.9
1,645,671 - 12588 mRNA_4220 0.81 -0.1
1,645,699 + 12588 mRNA_4220 0.83 0.4
1,645,817 - 0.4
1,645,843 - -0.1
1,645,852 - 0.4
1,645,866 - 0.2
1,645,903 + 0.6
1,645,975 - -0.1
1,645,979 - 0.4
1,646,000 - 0.2
1,646,028 - 2.4
1,646,038 + 0.9
1,646,140 - 0.1
1,646,150 + -0.2
1,646,155 + -0.6
1,646,159 - 0.9
1,646,168 + 1.9
1,646,335 + 12589 mRNA_4221 0.14 0.6
1,646,382 + 12589 mRNA_4221 0.16 0.5
1,646,579 - 12589 mRNA_4221 0.28 0.7
1,646,619 - 12589 mRNA_4221 0.30 1.9
1,646,756 + 12589 mRNA_4221 0.38 1.7
1,646,756 - 12589 mRNA_4221 0.38 0.3
1,646,759 - 12589 mRNA_4221 0.38 1.6
1,646,849 + 12589 mRNA_4221 0.44 0.6
1,646,873 + 12589 mRNA_4221 0.45 1.7
1,647,021 - 12589 mRNA_4221 0.54 2.3
1,647,286 + 12589 mRNA_4221 0.69 -0.9
1,647,610 - 12589 mRNA_4221 0.88 1.2
1,647,772 + 2.2
1,648,068 - 12590 mRNA_4222 0.20 0.2
1,648,351 - 12590 mRNA_4222 0.50 -0.2
1,648,383 + 12590 mRNA_4222 0.53 0.2
1,648,424 + 12590 mRNA_4222 0.58 0.1
1,648,507 + 12590 mRNA_4222 0.66 0.1
1,648,519 + 12590 mRNA_4222 0.68 0.7
1,648,539 + 12590 mRNA_4222 0.70 2.9
1,648,795 + -0.0