Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4208

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4207: 12575 - BLAST similar to An07g08470 [Aspergillus kawachii IFO 4308], at 1611743 to 1613207 12575 mRNA_4208: 12576 - K17919 SNX4 sorting nexin-4, at 1613612 to 1615514 12576 mRNA_4209: 12577 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1615699 to 1618403 12577

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,612,675 + 12575 mRNA_4207 0.64 -0.3
1,612,686 - 12575 mRNA_4207 0.64 -0.4
1,612,855 - 12575 mRNA_4207 0.76 -0.4
1,612,978 - 12575 mRNA_4207 0.84 0.4
1,612,991 - 12575 mRNA_4207 0.85 1.0
1,613,128 + 0.2
1,613,168 + 1.1
1,613,276 - -0.2
1,613,286 - -0.0
1,613,295 + 0.8
1,613,312 + 0.2
1,613,457 + 0.1
1,613,566 + 0.2
1,613,570 - -1.1
1,613,615 + -0.0
1,613,722 + 0.0
1,614,565 + 12576 mRNA_4208 0.50 2.0
1,614,573 - 12576 mRNA_4208 0.50 -1.5
1,614,579 - 12576 mRNA_4208 0.51 0.8
1,615,291 - 12576 mRNA_4208 0.88 1.1
1,615,448 - -0.8
1,615,451 + 0.6
1,615,546 - -1.0
1,615,579 + 1.0
1,615,723 - -0.9
1,615,740 + -0.7
1,615,741 + 2.0
1,615,844 + -1.4
1,615,893 - 1.4
1,615,930 + 0.1
1,616,165 + 12577 mRNA_4209 0.17 0.6
1,616,170 - 12577 mRNA_4209 0.17 1.3
1,616,192 - 12577 mRNA_4209 0.18 0.6
1,616,199 + 12577 mRNA_4209 0.18 -0.3
1,616,310 + 12577 mRNA_4209 0.23 -0.2