Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4198

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4197: 12565 - K00512 CYP17A steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase, at 1588332 to 1590437 12565 mRNA_4198: 12566 - K00166 BCKDHA, bkdA1 2-oxoisovalerate dehydrogenase E1 component alpha subunit, at 1590487 to 1592266 12566 mRNA_4199: 12567 - KOG1303 Amino acid transporters, at 1592651 to 1594788 12567

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,589,660 - 12565 mRNA_4197 0.63 0.0
1,590,082 - 12565 mRNA_4197 0.83 1.9
1,590,103 + 12565 mRNA_4197 0.84 -1.0
1,590,385 - 2.7
1,591,418 + 12566 mRNA_4198 0.52 1.2
1,591,427 - 12566 mRNA_4198 0.53 2.1
1,591,736 - 12566 mRNA_4198 0.70 0.8
1,591,983 + 12566 mRNA_4198 0.84 -0.2
1,592,016 + 12566 mRNA_4198 0.86 -0.3
1,592,150 - -0.9
1,592,157 - -1.3
1,592,207 + 0.3
1,592,319 + -0.1
1,592,386 - 2.9
1,592,398 + 0.6
1,592,514 - -0.1
1,592,526 + -0.6
1,592,528 + -0.7
1,592,850 - 0.5
1,593,064 + 12567 mRNA_4199 0.19 0.2
1,593,207 - 12567 mRNA_4199 0.26 0.8