Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4153

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4152: 12520 - K15026 EIF2A translation initiation factor 2A, at 1478311 to 1480762 12520 mRNA_4153: 12521 - K20347 TMED2, EMP24 p24 family protein beta-1, at 1481592 to 1482556 12521 mRNA_4154: 12522 - K17402 MRPS23 small subunit ribosomal protein S23, at 1482956 to 1484034 12522

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,480,781 - 0.4
1,480,906 + -1.3
1,480,919 + 0.4
1,480,928 + -0.2
1,481,055 - -0.2
1,481,139 + -1.2
1,481,164 + 1.6
1,481,219 - 0.9
1,481,220 - -1.0
1,481,233 - 0.9
1,481,233 + -0.2
1,481,234 + 0.9
1,481,247 + 4.3
1,481,254 - -0.5
1,481,256 - -0.0
1,481,764 + 12521 mRNA_4153 0.18 2.0
1,482,182 - 12521 mRNA_4153 0.61 0.5
1,482,331 - 12521 mRNA_4153 0.77 -1.4
1,482,342 - 12521 mRNA_4153 0.78 0.1
1,482,349 + 12521 mRNA_4153 0.78 0.1
1,482,366 + 12521 mRNA_4153 0.80 2.0
1,482,370 - 12521 mRNA_4153 0.81 -0.0
1,482,451 + 12521 mRNA_4153 0.89 -0.5
1,482,616 + -0.0
1,482,627 - 0.1
1,482,637 - -0.1
1,482,640 + -0.5
1,482,746 - 0.2
1,482,761 - 1.1
1,482,765 - 0.4
1,482,799 + -2.1
1,482,898 - -1.7
1,482,915 - -0.3
1,482,926 - 0.2
1,482,929 + 0.8