Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4137

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1443015 to 1447458 12505 mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1448098 to 1448646 12506

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,442,134 + -1.5
1,442,142 + -0.2
1,442,258 - -2.4
1,442,261 - -0.3
1,442,262 + -0.1
1,442,267 - 0.8
1,442,292 - 2.2
1,442,309 - 1.5
1,442,310 + 1.4
1,442,338 + -0.2
1,442,458 - 0.8
1,442,462 + -0.1
1,442,475 - 1.0
1,442,483 - 0.1
1,442,612 + -0.3
1,442,624 + 1.4
1,442,758 - 1.8
1,442,768 + 0.2
1,442,776 + -0.6
1,442,783 - 1.6
1,442,784 - -0.5
1,442,784 + 1.8
1,442,792 - -1.2
1,442,797 + 1.8
1,442,929 + 0.4
1,442,941 + 0.3
1,442,981 + 0.7
1,443,091 - 2.0
1,443,222 - -0.3
1,443,379 - -0.4
1,443,524 - 12505 mRNA_4137 0.11 -0.9
1,443,663 - 12505 mRNA_4137 0.15 0.1
1,443,787 + 12505 mRNA_4137 0.17 -0.1
1,443,952 - 12505 mRNA_4137 0.21 0.2
1,444,239 + 12505 mRNA_4137 0.28 -0.1
1,444,410 - 12505 mRNA_4137 0.31 -1.0
1,444,546 - 12505 mRNA_4137 0.34 0.9
1,444,730 - 12505 mRNA_4137 0.39 -1.0
1,444,823 - 12505 mRNA_4137 0.41 -1.8
1,444,840 + 12505 mRNA_4137 0.41 0.3
1,444,857 + 12505 mRNA_4137 0.41 -0.5
1,445,225 + 12505 mRNA_4137 0.50 1.3
1,445,433 + 12505 mRNA_4137 0.54 0.4
1,446,050 + 12505 mRNA_4137 0.68 0.8
1,446,126 - 12505 mRNA_4137 0.70 0.8
1,446,186 + 12505 mRNA_4137 0.71 1.8
1,446,266 + 12505 mRNA_4137 0.73 1.0
1,446,470 - 12505 mRNA_4137 0.78 1.8
1,446,620 - 12505 mRNA_4137 0.81 2.6
1,446,663 + 12505 mRNA_4137 0.82 0.8
1,447,015 + 0.0
1,447,065 + 0.4
1,447,069 + 0.4
1,447,212 - -0.7
1,447,217 + 3.5
1,447,478 - -0.9
1,447,570 - 1.3
1,447,770 - -4.7
1,447,788 + 1.4
1,447,947 + -0.6
1,447,950 + -0.4
1,448,046 + 1.3
1,448,060 + -0.4
1,448,060 - -0.7
1,448,215 - 12506 mRNA_4138 0.21 0.0
1,448,363 + 12506 mRNA_4138 0.48 2.2
1,448,439 - 12506 mRNA_4138 0.62 -0.2