Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4112

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1376562 to 1377671 12479 mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1378043 to 1379698 12480 mRNA_4113: 12481 - K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e, at 1380385 to 1381859 12481

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,377,057 - 12479 mRNA_4111 0.45 -0.9
1,377,228 - 12479 mRNA_4111 0.60 2.4
1,377,528 + 12479 mRNA_4111 0.87 -0.6
1,377,679 + 0.5
1,377,799 + 0.1
1,377,814 - 1.5
1,377,816 + -1.1
1,377,816 + 2.8
1,377,817 + 0.5
1,377,822 - -0.2
1,377,825 + 0.3
1,377,834 - 2.1
1,377,839 + -0.7
1,377,843 - -0.9
1,377,859 + -0.7
1,377,981 - -0.7
1,377,994 + 1.0
1,378,023 + 0.5
1,378,118 + 1.3
1,378,288 + 12480 mRNA_4112 0.15 -0.2
1,378,288 + 12480 mRNA_4112 0.15 0.3
1,378,310 - 12480 mRNA_4112 0.16 0.8
1,378,447 + 12480 mRNA_4112 0.24 -0.2
1,378,544 - 12480 mRNA_4112 0.30 -0.6
1,378,581 - 12480 mRNA_4112 0.32 1.9
1,378,598 + 12480 mRNA_4112 0.34 0.7
1,378,601 + 12480 mRNA_4112 0.34 1.2
1,378,717 - 12480 mRNA_4112 0.41 1.4
1,378,912 + 12480 mRNA_4112 0.52 -0.9
1,379,194 + 12480 mRNA_4112 0.70 -1.8
1,379,579 - 2.7
1,379,588 + -0.7
1,379,750 - 3.0
1,379,872 - 2.4
1,379,881 + 2.0
1,379,886 - 0.3
1,380,046 + -0.2
1,380,174 - 0.3
1,380,183 + -0.2
1,380,307 - 1.8
1,380,326 - -0.2
1,380,327 + -1.4
1,380,343 - 0.3
1,380,347 - -0.3